TF_ChIP-seq_ENCSR159RBE
TF_ChIP-seq ENCSR159RBE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1" and target="GLYR1"]
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| Id: | TF_ChIP-seq/ENCSR159RBE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR159RBE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1" and target="GLYR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN203XHV|/analyses/ENCAN203XHV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF438DBB|/files/ENCFF438DBB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF438DBB|/files/ENCFF438DBB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF940GKH|/files/ENCFF940GKH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF940GKH|/files/ENCFF940GKH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR159RBE | float |
TF_ChIP-seq_ENCSR159RBE |
TF_ChIP-seq ENCSR159RBE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GLYR1" and target="GLYR1"]
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[13.7, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF270ONC.bed.gz | 365.79 KB | a7ac3d88276520126436a37e1e7d3cc1 |
| ENCFF270ONC.bed.gz.dvc | 100.0 B | b8d26238a65c5b3097db08b2563ecc19 |
| ENCFF270ONC.tabix.bed.gz | 273.2 KB | 92baf1b4f7be91bb1ad9dda2b017eb6c |
| ENCFF270ONC.tabix.bed.gz.dvc | 106.0 B | 9fa4ae8091ee224dfe46c5759fea0b97 |
| ENCFF270ONC.tabix.bed.gz.tbi | 116.12 KB | 849237b3eea789296ffcc4f38538fc9d |
| ENCFF270ONC.tabix.bed.gz.tbi.dvc | 110.0 B | a7f2bdb180da1ac8dd43ec09080add04 |
| genomic_resource.yaml | 4.23 KB | e705c919d5ef95fcc7ef7b8a22cd1a76 |
| genomic_resource_original.yaml | 4.07 KB | 1643420a84c2bf5dff2f4d400cb0efe7 |
| statistics/ |