| Id: | TF_ChIP-seq/ENCSR159BTO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR159BTO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5" and target="ZKSCAN5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN871ISY|/analyses/ENCAN871ISY/} has in progress subobject document {b2a4e5ca-52b9-4942-bc33-4b08f70b388e|/documents/b2a4e5ca-52b9-4942-bc33-4b08f70b388e/} audit_internal_action: Released analysis {ENCAN871ISY|/analyses/ENCAN871ISY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF511FBE|/files/ENCFF511FBE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF511FBE|/files/ENCFF511FBE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.72. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR159BTO | float |
TF_ChIP-seq_ENCSR159BTO |
TF_ChIP-seq ENCSR159BTO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN5" and target="ZKSCAN5"]
|
 |
[7.44, 688] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF669MLA.bed.gz | 90.69 KB | 599a93e63ac13b87e5ce0266d5b32895 |
| ENCFF669MLA.bed.gz.dvc | 99.0 B | 8bc75d760629baf12b96cde498be8fe3 |
| ENCFF669MLA.tabix.bed.gz | 67.32 KB | cbae80b821cf1151726e1e783c4eb116 |
| ENCFF669MLA.tabix.bed.gz.dvc | 105.0 B | 2365911305bddd1a57794b08519702de |
| ENCFF669MLA.tabix.bed.gz.tbi | 43.69 KB | 1af756438fb6c2f28a5539685cce9bcb |
| ENCFF669MLA.tabix.bed.gz.tbi.dvc | 109.0 B | a749bc3780d864ab3f19b623602a2f2d |
| genomic_resource.yaml | 3.19 KB | c71fd89856e0fdc4318138b14e63dd4f |
| genomic_resource_original.yaml | 3.02 KB | 6a5a69a49d39e6c65872b3fb30bb6508 |
| statistics/ |