TF_ChIP-seq_ENCSR158LJN
TF_ChIP-seq ENCSR158LJN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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| Id: | TF_ChIP-seq/ENCSR158LJN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR158LJN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAX output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN034SBX|/analyses/ENCAN034SBX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF428YJS|/files/ENCFF428YJS/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF428YJS|/files/ENCFF428YJS/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.27. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF870SUX|/files/ENCFF870SUX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF870SUX|/files/ENCFF870SUX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR158LJN | float |
TF_ChIP-seq_ENCSR158LJN |
TF_ChIP-seq ENCSR158LJN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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[16.1, 869] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF266YHW.bed.gz | 512.82 KB | 57d0811daccb6c9e014828ca2d3657fc |
| ENCFF266YHW.bed.gz.dvc | 100.0 B | d2f62f820c9b012b51e2aab7c24ffbad |
| ENCFF266YHW.tabix.bed.gz | 412.7 KB | 1a65046969e12fbac0099ae80ca7f7be |
| ENCFF266YHW.tabix.bed.gz.dvc | 106.0 B | 298017fd2febd98f239cd90f9bb1be43 |
| ENCFF266YHW.tabix.bed.gz.tbi | 141.46 KB | 597ba961c383ee9ba1cdff910757b2b2 |
| ENCFF266YHW.tabix.bed.gz.tbi.dvc | 110.0 B | b09cc60a3b5ed86815f54f593013622f |
| genomic_resource.yaml | 4.21 KB | d4d9df7c2b44c87e460ac0a7be9430ff |
| genomic_resource_original.yaml | 4.05 KB | 8dd44855fd879c0cb82004eecd807648 |
| statistics/ |