TF_ChIP-seq_ENCSR157TCS
TF_ChIP-seq ENCSR157TCS [biosample_summary="Homo sapiens K562" and target="SMARCE1"]
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| Id: | TF_ChIP-seq/ENCSR157TCS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR157TCS [biosamplesummary="Homo sapiens K562" and target="SMARCE1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN660MVY|/analyses/ENCAN660MVY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF116IRE|/files/ENCFF116IRE/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF116IRE|/files/ENCFF116IRE/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR157TCS | float |
TF_ChIP-seq_ENCSR157TCS |
TF_ChIP-seq ENCSR157TCS [biosample_summary="Homo sapiens K562" and target="SMARCE1"]
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[11.5, 1.92e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF148YMC.bed.gz | 623.47 KB | ba98894aaca7a8c8480d23fa49f5b1cc |
| ENCFF148YMC.bed.gz.dvc | 100.0 B | 44a47e06abb730b3887cfb9faec6ecfc |
| ENCFF148YMC.tabix.bed.gz | 428.32 KB | 7d3b29618c24304713ed78d671976447 |
| ENCFF148YMC.tabix.bed.gz.dvc | 106.0 B | bd08b4a55e56669987ce2003e70453ab |
| ENCFF148YMC.tabix.bed.gz.tbi | 169.39 KB | f36df8e60c54077752347c017caf325b |
| ENCFF148YMC.tabix.bed.gz.tbi.dvc | 110.0 B | edaad31567f560eae6c20ee5a5f53b1f |
| genomic_resource.yaml | 2.66 KB | 73c724d1e78779939747ff7feb989d48 |
| genomic_resource_original.yaml | 2.56 KB | 9e790edaed4ee88e6d96c243652d7ac3 |
| statistics/ |