TF_ChIP-seq_ENCSR155KHM
TF_ChIP-seq ENCSR155KHM [biosample_summary="Homo sapiens K562" and target="ARNT"]
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| Id: | TF_ChIP-seq/ENCSR155KHM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR155KHM [biosamplesummary="Homo sapiens K562" and target="ARNT"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN079CXN|/analyses/ENCAN079CXN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF367QVT|/files/ENCFF367QVT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF367QVT|/files/ENCFF367QVT/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF518IYV|/files/ENCFF518IYV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF518IYV|/files/ENCFF518IYV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.69. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR155KHM | float |
TF_ChIP-seq_ENCSR155KHM |
TF_ChIP-seq ENCSR155KHM [biosample_summary="Homo sapiens K562" and target="ARNT"]
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[12.8, 956] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF507MGL.bed.gz | 209.22 KB | 5840c9b0b65a89375f82d3cdf94ec1f5 |
| ENCFF507MGL.bed.gz.dvc | 100.0 B | f806d3fecac89c4d5643d05784ae2206 |
| ENCFF507MGL.tabix.bed.gz | 150.98 KB | 02f28049b464b12cd3060a4ddb15dbf1 |
| ENCFF507MGL.tabix.bed.gz.dvc | 106.0 B | e658b301de865ca45a985502c1c7ff9a |
| ENCFF507MGL.tabix.bed.gz.tbi | 77.54 KB | fda7f448ff841a5607b7294d46f51381 |
| ENCFF507MGL.tabix.bed.gz.tbi.dvc | 109.0 B | 3b7edd17a198275e5c8320db7ffcf62d |
| genomic_resource.yaml | 3.93 KB | 4bd9602a83a94da78e837d35bf4ce0ce |
| genomic_resource_original.yaml | 3.84 KB | 2ba2c8585a05295449d66e8138119342 |
| statistics/ |