TF_ChIP-seq_ENCSR155IXY
TF_ChIP-seq ENCSR155IXY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF747" and target="ZNF747"]
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| Id: | TF_ChIP-seq/ENCSR155IXY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR155IXY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF747" and target="ZNF747"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF747 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN179FCP|/analyses/ENCAN179FCP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF552QNO|/files/ENCFF552QNO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF552QNO|/files/ENCFF552QNO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.06. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF423YKZ|/files/ENCFF423YKZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF423YKZ|/files/ENCFF423YKZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.59. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF672ZEZ|/files/ENCFF672ZEZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.24 and a self consistency ratio of 2.79. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR155IXY | float |
TF_ChIP-seq_ENCSR155IXY |
TF_ChIP-seq ENCSR155IXY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF747" and target="ZNF747"]
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[10.4, 422] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF672ZEZ.bed.gz | 298.11 KB | 0cbe0849a7e19dbc9ed6b0c89d2dc9e6 |
| ENCFF672ZEZ.bed.gz.dvc | 100.0 B | 453e8fb2e9f6f49675ef16439c6a70fa |
| ENCFF672ZEZ.tabix.bed.gz | 234.96 KB | 604f692e944661689542ff70892e4197 |
| ENCFF672ZEZ.tabix.bed.gz.dvc | 106.0 B | 84c12a9882f64d5ea61c5e9457eb3b99 |
| ENCFF672ZEZ.tabix.bed.gz.tbi | 95.16 KB | 19d14d578c52a238f9f1cb94c16849a1 |
| ENCFF672ZEZ.tabix.bed.gz.tbi.dvc | 109.0 B | b1e22942b67aed2474ad179702373a26 |
| genomic_resource.yaml | 4.76 KB | 840422e137d3c58a8fe2c615339359de |
| genomic_resource_original.yaml | 4.59 KB | 008dfccbf0afddc7a22d931fb10084e5 |
| statistics/ |