TF_ChIP-seq_ENCSR154YWK
TF_ChIP-seq ENCSR154YWK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558" and target="ZNF558"]
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| Id: | TF_ChIP-seq/ENCSR154YWK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR154YWK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558" and target="ZNF558"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN328LST|/analyses/ENCAN328LST/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF677RTX|/files/ENCFF677RTX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF677RTX|/files/ENCFF677RTX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.49. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF713YSC|/files/ENCFF713YSC/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF713YSC|/files/ENCFF713YSC/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.40. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF623HZY|/files/ENCFF623HZY/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.91 and a self consistency ratio of 8.42. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR154YWK | float |
TF_ChIP-seq_ENCSR154YWK |
TF_ChIP-seq ENCSR154YWK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF558" and target="ZNF558"]
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[10.8, 466] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF623HZY.bed.gz | 238.94 KB | 485e68a7ce65a3140500ff237e5e5be6 |
| ENCFF623HZY.bed.gz.dvc | 100.0 B | 44dc07d567253944e59a85ec5f2b87f4 |
| ENCFF623HZY.tabix.bed.gz | 193.22 KB | 423940a196afd618d4536a8b104d15f4 |
| ENCFF623HZY.tabix.bed.gz.dvc | 106.0 B | abc48f6ce951e3fcc10b2bd2813f70f5 |
| ENCFF623HZY.tabix.bed.gz.tbi | 75.46 KB | 3cb04a8b7a11b24d4b8a54f05d1c6e6f |
| ENCFF623HZY.tabix.bed.gz.tbi.dvc | 109.0 B | 56563c9a95c1e3ef6a06d2a799a99a0b |
| genomic_resource.yaml | 4.76 KB | 9a47aebf7a9d84201e871891a2b0fb1e |
| genomic_resource_original.yaml | 4.59 KB | 02107d4ed46f9ed3108a7a5b1dda5ec2 |
| statistics/ |