TF_ChIP-seq_ENCSR151WAM
TF_ChIP-seq ENCSR151WAM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBNL3" and target="MBNL3"]
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| Id: | TF_ChIP-seq/ENCSR151WAM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR151WAM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBNL3" and target="MBNL3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MBNL3 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN720EEC|/analyses/ENCAN720EEC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF402VUU|/files/ENCFF402VUU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF402VUU|/files/ENCFF402VUU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR151WAM | float |
TF_ChIP-seq_ENCSR151WAM |
TF_ChIP-seq ENCSR151WAM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MBNL3" and target="MBNL3"]
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[17.6, 293] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF773HRY.bed.gz | 9.9 KB | d79c70ec0632dc8e5cdada66bb7607b5 |
| ENCFF773HRY.bed.gz.dvc | 99.0 B | bb778b85e50565037a77917294abbcf5 |
| ENCFF773HRY.tabix.bed.gz | 6.2 KB | 425a4c01c0814eee2d7793c10df038c1 |
| ENCFF773HRY.tabix.bed.gz.dvc | 104.0 B | 729aa890407adc188a5a3d7b81724395 |
| ENCFF773HRY.tabix.bed.gz.tbi | 8.93 KB | d1c8bde720f72e0c414de2a2a008f952 |
| ENCFF773HRY.tabix.bed.gz.tbi.dvc | 108.0 B | 214371525578669b13b9cc6c11fb829f |
| genomic_resource.yaml | 2.98 KB | 8bc9d60a5302bde784e2729042415196 |
| genomic_resource_original.yaml | 2.81 KB | 61721372fdef8d592aeafd4a42581cc1 |
| statistics/ |