TF_ChIP-seq_ENCSR150QDE
TF_ChIP-seq ENCSR150QDE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SREBF2" and target="SREBF2"]
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| Id: | TF_ChIP-seq/ENCSR150QDE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR150QDE [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SREBF2" and target="SREBF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SREBF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN476CNS|/analyses/ENCAN476CNS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN476CNS|/analyses/ENCAN476CNS/} has in progress subobject document {159fa3fa-0465-4144-8a82-4fac8eb98098|/documents/159fa3fa-0465-4144-8a82-4fac8eb98098/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF264ZWL|/files/ENCFF264ZWL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF264ZWL|/files/ENCFF264ZWL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.89. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF223FUU|/files/ENCFF223FUU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF223FUU|/files/ENCFF223FUU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR150QDE | float |
TF_ChIP-seq_ENCSR150QDE |
TF_ChIP-seq ENCSR150QDE [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SREBF2" and target="SREBF2"]
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[10.8, 324] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF710YFH.bed.gz | 31.97 KB | adbf8f1fd7b2c09c2a09951ef9781573 |
| ENCFF710YFH.bed.gz.dvc | 99.0 B | d53e8106ed97553f1922c61e9cd7524f |
| ENCFF710YFH.tabix.bed.gz | 22.19 KB | 6fee2565cc8552591f93db00821c8098 |
| ENCFF710YFH.tabix.bed.gz.dvc | 105.0 B | 82184d1d6ec8212067d6481a150b951e |
| ENCFF710YFH.tabix.bed.gz.tbi | 18.28 KB | 2a9b3f05ebb2993668281f5c507305c5 |
| ENCFF710YFH.tabix.bed.gz.tbi.dvc | 109.0 B | ecbdbea8d6d03bb613d489b1d238b1ed |
| genomic_resource.yaml | 4.45 KB | 5279876df87e82fed343af1c020eea1d |
| genomic_resource_original.yaml | 4.28 KB | 86a9c4d3593a9ccf6c24b7aa6aeade86 |
| statistics/ |