TF_ChIP-seq_ENCSR149ZBI
TF_ChIP-seq ENCSR149ZBI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584" and target="ZNF584"]
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| Id: | TF_ChIP-seq/ENCSR149ZBI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR149ZBI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584" and target="ZNF584"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN887QNT|/analyses/ENCAN887QNT/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF057CNY|/files/ENCFF057CNY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17171342 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF584-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF216TEN|/files/ENCFF216TEN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18092775 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF584-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF216TEN|/files/ENCFF216TEN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF216TEN|/files/ENCFF216TEN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR149ZBI | float |
TF_ChIP-seq_ENCSR149ZBI |
TF_ChIP-seq ENCSR149ZBI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF584" and target="ZNF584"]
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[7.46, 640] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF544HIJ.bed.gz | 269.31 KB | a03a4b47186bd0794eef7366c45cf94e |
| ENCFF544HIJ.bed.gz.dvc | 100.0 B | f4be51d11783f3357ff09c3d04c45814 |
| ENCFF544HIJ.tabix.bed.gz | 220.31 KB | 194342aa8f1a061cbf0b5d19fd89e82b |
| ENCFF544HIJ.tabix.bed.gz.dvc | 106.0 B | 5b9956fe03661996b8ea440f248f568b |
| ENCFF544HIJ.tabix.bed.gz.tbi | 82.51 KB | c04ff35a9ea8b4766cd63d5ce17fa090 |
| ENCFF544HIJ.tabix.bed.gz.tbi.dvc | 109.0 B | 0e0685162c9609475ab1a9ba45aad1e6 |
| genomic_resource.yaml | 3.92 KB | 1834c9e8cfb1ca28c9f4f5fdf1d778f0 |
| genomic_resource_original.yaml | 3.76 KB | fb65e0c4e2eed0f6578397e88dc23c68 |
| statistics/ |