| Id: | TF_ChIP-seq/ENCSR146NLL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR146NLL [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1" and target="REPIN1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF565NIW|/files/ENCFF565NIW/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN299KVB|/analyses/ENCAN299KVB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF071SPF|/files/ENCFF071SPF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13347471 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REPIN1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF277SUI|/files/ENCFF277SUI/}, {ENCFF565NIW|/files/ENCFF565NIW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.44 and a self consistency ratio of 1.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF607YXV|/files/ENCFF607YXV/}, {ENCFF881ZPZ|/files/ENCFF881ZPZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.44 and a self consistency ratio of 1.01. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR146NLL | float |
TF_ChIP-seq_ENCSR146NLL |
TF_ChIP-seq ENCSR146NLL [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens REPIN1" and target="REPIN1"]
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[12, 353] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF565NIW.bed.gz | 116.82 KB | e606535cd11c3d9b599ce057515a51b2 |
| ENCFF565NIW.bed.gz.dvc | 100.0 B | 602cb2df6f595ef9c0c6b1bed497df12 |
| ENCFF565NIW.tabix.bed.gz | 79.6 KB | cd59e60472d9cb34a1ab9f51bb1c6824 |
| ENCFF565NIW.tabix.bed.gz.dvc | 105.0 B | e8433c7bdc9eaa25ecb856523b99d61f |
| ENCFF565NIW.tabix.bed.gz.tbi | 51.83 KB | 2b7989e5a2dfa56745eece99c4115acc |
| ENCFF565NIW.tabix.bed.gz.tbi.dvc | 109.0 B | 9704e5c8e33099357db04ac1075c022b |
| genomic_resource.yaml | 3.73 KB | f7b5840e7bf06464358eb51aa9476690 |
| genomic_resource_original.yaml | 3.55 KB | ed35efc90397a5a6749170dedb54ccb7 |
| statistics/ |