TF_ChIP-seq_ENCSR145TSJ
TF_ChIP-seq ENCSR145TSJ [biosample_summary="Homo sapiens K562" and target="ATF4"]
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| Id: | TF_ChIP-seq/ENCSR145TSJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR145TSJ [biosamplesummary="Homo sapiens K562" and target="ATF4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN117QJU|/analyses/ENCAN117QJU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF676XEB|/files/ENCFF676XEB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF676XEB|/files/ENCFF676XEB/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.42. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF258YDE|/files/ENCFF258YDE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF258YDE|/files/ENCFF258YDE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.14. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR145TSJ | float |
TF_ChIP-seq_ENCSR145TSJ |
TF_ChIP-seq ENCSR145TSJ [biosample_summary="Homo sapiens K562" and target="ATF4"]
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[11.1, 2.56e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF710IEF.bed.gz | 746.62 KB | e9766301d4959d4c2c900a42e3e9c2d2 |
| ENCFF710IEF.bed.gz.dvc | 100.0 B | 7b110e2565daee4f8a9828aed1bf0368 |
| ENCFF710IEF.tabix.bed.gz | 512.07 KB | 6c4c941b8ecf11683efec1f01609d779 |
| ENCFF710IEF.tabix.bed.gz.dvc | 106.0 B | 490a5f568b6b40e63f44becfbb6edb9e |
| ENCFF710IEF.tabix.bed.gz.tbi | 255.89 KB | 2fd8d8978322a1a291475556727e70a3 |
| ENCFF710IEF.tabix.bed.gz.tbi.dvc | 110.0 B | f931c0acf0162d8c0af3e132a705aec4 |
| genomic_resource.yaml | 4.48 KB | d0b39805851cb388bf37bc4b70871256 |
| genomic_resource_original.yaml | 4.38 KB | 2d481a13990e5e77ceed1595994722a5 |
| statistics/ |