TF_ChIP-seq_ENCSR145CXH
TF_ChIP-seq ENCSR145CXH [biosample_summary="Homo sapiens HepG2" and target="TARDBP"]
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| Id: | TF_ChIP-seq/ENCSR145CXH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR145CXH [biosamplesummary="Homo sapiens HepG2" and target="TARDBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN986CJG|/analyses/ENCAN986CJG/} has in progress subobject document {56d3d3b8-044f-4675-a392-b1edb37ff7b7|/documents/56d3d3b8-044f-4675-a392-b1edb37ff7b7/} audit_internal_action: Released analysis {ENCAN986CJG|/analyses/ENCAN986CJG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF510CFC|/files/ENCFF510CFC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF510CFC|/files/ENCFF510CFC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF340BEE|/files/ENCFF340BEE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF340BEE|/files/ENCFF340BEE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.51. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF292XSQ|/files/ENCFF292XSQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 4.47. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR145CXH | float |
TF_ChIP-seq_ENCSR145CXH |
TF_ChIP-seq ENCSR145CXH [biosample_summary="Homo sapiens HepG2" and target="TARDBP"]
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[6.81, 435] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292XSQ.bed.gz | 132.1 KB | 34ec1aadb3cd9457cbaa762bf3886076 |
| ENCFF292XSQ.bed.gz.dvc | 100.0 B | 893a333d5a64063c6a5d74f2b6375bea |
| ENCFF292XSQ.tabix.bed.gz | 99.52 KB | 6d78c389395bc5d7068de694c2595aa9 |
| ENCFF292XSQ.tabix.bed.gz.dvc | 106.0 B | 83f96e5576c15dc3a5b04ae8d35afa2d |
| ENCFF292XSQ.tabix.bed.gz.tbi | 57.68 KB | 61a905e41024fb601cb3cdfac6b3b897 |
| ENCFF292XSQ.tabix.bed.gz.tbi.dvc | 109.0 B | 2c10ceea6abeb8c7e2a5f2024cbdc508 |
| genomic_resource.yaml | 4.73 KB | d961eeb1709705a4bddce34f083f7bea |
| genomic_resource_original.yaml | 4.63 KB | 18365184378dd7d6f27f7722e2d98438 |
| statistics/ |