TF_ChIP-seq_ENCSR144NTH
TF_ChIP-seq ENCSR144NTH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK" and target="RBAK"]
×
| Id: | TF_ChIP-seq/ENCSR144NTH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR144NTH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK" and target="RBAK"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RBAK output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN071CWO|/analyses/ENCAN071CWO/} has in progress subobject document {d70e0bd0-a407-49cd-a1e8-b5bcfeb4c20b|/documents/d70e0bd0-a407-49cd-a1e8-b5bcfeb4c20b/} audit_internal_action: Released analysis {ENCAN071CWO|/analyses/ENCAN071CWO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF695QZE|/files/ENCFF695QZE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF695QZE|/files/ENCFF695QZE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF804LSU|/files/ENCFF804LSU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF804LSU|/files/ENCFF804LSU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.63. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR144NTH | float |
TF_ChIP-seq_ENCSR144NTH |
TF_ChIP-seq ENCSR144NTH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens RBAK" and target="RBAK"]
|
|
[7.84, 656] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF080TIX.bed.gz | 94.71 KB | 500f7f97f29ca07060e5080d7543013c |
| ENCFF080TIX.bed.gz.dvc | 99.0 B | eb29a54966741da60239c1b0ac03da02 |
| ENCFF080TIX.tabix.bed.gz | 71.99 KB | 82d7b0ba8c99facd2fc9cdc7da7ea692 |
| ENCFF080TIX.tabix.bed.gz.dvc | 105.0 B | 3076eef85feea55447166d86bacc46c9 |
| ENCFF080TIX.tabix.bed.gz.tbi | 48.03 KB | 178a5619302fccbec2e64bf16f91fa37 |
| ENCFF080TIX.tabix.bed.gz.tbi.dvc | 109.0 B | 57cdb73c213b37c6d3bf7a60545c7302 |
| genomic_resource.yaml | 4.43 KB | 0442766616fb40b23a74ca6fe32be9cf |
| genomic_resource_original.yaml | 4.27 KB | 236930fe86be14929d5433bfbbff913d |
| statistics/ |