TF_ChIP-seq_ENCSR141XJW
TF_ChIP-seq ENCSR141XJW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID2" and target="ARID2"]
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| Id: | TF_ChIP-seq/ENCSR141XJW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR141XJW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID2" and target="ARID2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARID2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN757QFH|/analyses/ENCAN757QFH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF010NPJ|/files/ENCFF010NPJ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF010NPJ|/files/ENCFF010NPJ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.64. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF165MOD|/files/ENCFF165MOD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.18 and a self consistency ratio of 2.07. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR141XJW | float |
TF_ChIP-seq_ENCSR141XJW |
TF_ChIP-seq ENCSR141XJW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID2" and target="ARID2"]
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[17, 376] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF165MOD.bed.gz | 255.65 KB | f81aa707e6faa2c0435283b90c67dc72 |
| ENCFF165MOD.bed.gz.dvc | 100.0 B | faa8367a4b3995d74d455894ed334517 |
| ENCFF165MOD.tabix.bed.gz | 202.98 KB | 5e41f95762a9d5e7ec6a83926bd9f232 |
| ENCFF165MOD.tabix.bed.gz.dvc | 106.0 B | a37c22e0f71906b0cd8f387e23f231ea |
| ENCFF165MOD.tabix.bed.gz.tbi | 79.82 KB | 7869f660b2a2d70622c4503584c37804 |
| ENCFF165MOD.tabix.bed.gz.tbi.dvc | 109.0 B | ac142ff1f4eb8ba8bd07faf0890fc49b |
| genomic_resource.yaml | 3.49 KB | 802d0e11215919255c76c949348ea207 |
| genomic_resource_original.yaml | 3.32 KB | 6c94b0092841f913f0fe00cbac93adcb |
| statistics/ |