TF_ChIP-seq_ENCSR141ELR
TF_ChIP-seq ENCSR141ELR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778" and target="ZNF778"]
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| Id: | TF_ChIP-seq/ENCSR141ELR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR141ELR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778" and target="ZNF778"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN620VJD|/analyses/ENCAN620VJD/} has in progress subobject document {a859e734-7e23-4de0-8c74-87d001c59df5|/documents/a859e734-7e23-4de0-8c74-87d001c59df5/} audit_internal_action: Released analysis {ENCAN620VJD|/analyses/ENCAN620VJD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF869VTT|/files/ENCFF869VTT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF869VTT|/files/ENCFF869VTT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.31. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF832EZJ|/files/ENCFF832EZJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF832EZJ|/files/ENCFF832EZJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR141ELR | float |
TF_ChIP-seq_ENCSR141ELR |
TF_ChIP-seq ENCSR141ELR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF778" and target="ZNF778"]
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[9.3, 575] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF078ATH.bed.gz | 87.5 KB | bafe82148408f3028e38c9e326a14053 |
| ENCFF078ATH.bed.gz.dvc | 99.0 B | 47b0ada68ea81dbce29d0dd818a3cac1 |
| ENCFF078ATH.tabix.bed.gz | 65.91 KB | 7d31462d677c08675c7c8dd7aa7517c2 |
| ENCFF078ATH.tabix.bed.gz.dvc | 105.0 B | d325c966173bdeeae06a5524c921580f |
| ENCFF078ATH.tabix.bed.gz.tbi | 37.09 KB | 101e89c9aa7741bcbbdcb732b7fd94d5 |
| ENCFF078ATH.tabix.bed.gz.tbi.dvc | 109.0 B | 78206446c9d335e555182127183f76ba |
| genomic_resource.yaml | 4.45 KB | 7114bf03c30ed517aec8efb2b32d078b |
| genomic_resource_original.yaml | 4.29 KB | b053a2fce394f113ebff12747882320a |
| statistics/ |