TF_ChIP-seq_ENCSR140GLO
TF_ChIP-seq ENCSR140GLO [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
×
| Id: | TF_ChIP-seq/ENCSR140GLO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR140GLO [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN196DKA|/analyses/ENCAN196DKA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF019BPD|/files/ENCFF019BPD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF019BPD|/files/ENCFF019BPD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF645UUI|/files/ENCFF645UUI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF645UUI|/files/ENCFF645UUI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.27. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF335ZTU|/files/ENCFF335ZTU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 2.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR140GLO | float |
TF_ChIP-seq_ENCSR140GLO |
TF_ChIP-seq ENCSR140GLO [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD3" and target="SMAD3"]
|
|
[11.4, 291] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF335ZTU.bed.gz | 50.75 KB | 48ff6d2f45fc703cd6d2a4a7bcb9f895 |
| ENCFF335ZTU.bed.gz.dvc | 99.0 B | 7965b93e94b9bf1c831dadd4cebedc4f |
| ENCFF335ZTU.tabix.bed.gz | 35.64 KB | f18666ddb27f4bc4f470d50b4cf3a54b |
| ENCFF335ZTU.tabix.bed.gz.dvc | 105.0 B | e5628c9bee013d141ab030119c516e5b |
| ENCFF335ZTU.tabix.bed.gz.tbi | 17.97 KB | e1b4eb073a9e7d6ee08c595324f5581a |
| ENCFF335ZTU.tabix.bed.gz.tbi.dvc | 109.0 B | f64e61b7da1ddeea1d939f04f619eb08 |
| genomic_resource.yaml | 4.75 KB | 25e493f95c659afec89e8b6f7b75c6f9 |
| genomic_resource_original.yaml | 4.59 KB | b93d2b5d540757d15d777fbac3a7ccc7 |
| statistics/ |