TF_ChIP-seq_ENCSR138SFL
TF_ChIP-seq ENCSR138SFL [biosample_summary="Homo sapiens K562" and target="MCM2"]
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| Id: | TF_ChIP-seq/ENCSR138SFL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR138SFL [biosamplesummary="Homo sapiens K562" and target="MCM2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN024QCI|/analyses/ENCAN024QCI/} has in progress subobject document {ba79fcbb-488e-4b7a-a03f-1b3fdd19fd0d|/documents/ba79fcbb-488e-4b7a-a03f-1b3fdd19fd0d/} audit_internal_action: Released analysis {ENCAN024QCI|/analyses/ENCAN024QCI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF105AMA|/files/ENCFF105AMA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19442928 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MCM2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF805TYV|/files/ENCFF805TYV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19303642 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MCM2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF105AMA|/files/ENCFF105AMA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF105AMA|/files/ENCFF105AMA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR138SFL | float |
TF_ChIP-seq_ENCSR138SFL |
TF_ChIP-seq ENCSR138SFL [biosample_summary="Homo sapiens K562" and target="MCM2"]
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[11.1, 276] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF147IAH.bed.gz | 4.56 KB | 96e202d032364d50ef9bb122e9defe80 |
| ENCFF147IAH.bed.gz.dvc | 98.0 B | e55f24df0f613c32f4514a6abec730d2 |
| ENCFF147IAH.tabix.bed.gz | 2.98 KB | 5754eafe33f76d2a7b20e8d5cd1b7800 |
| ENCFF147IAH.tabix.bed.gz.dvc | 104.0 B | 360b2d5084b37d37244892f95876ce22 |
| ENCFF147IAH.tabix.bed.gz.tbi | 6.32 KB | c10e7f2a2a1fdd4d77f091109b11ffc9 |
| ENCFF147IAH.tabix.bed.gz.tbi.dvc | 108.0 B | 435e3dfdd2ac99a2c6cf3f4aa7136dad |
| genomic_resource.yaml | 3.87 KB | 45b2fb2d7fd2a28e0a1d1ecbc69a2e2a |
| genomic_resource_original.yaml | 3.77 KB | 61687d1c741313537849ba53386bb3f0 |
| statistics/ |