TF_ChIP-seq_ENCSR138FUZ
TF_ChIP-seq ENCSR138FUZ [biosample_summary="Homo sapiens K562" and target="RNF2"]
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| Id: | TF_ChIP-seq/ENCSR138FUZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR138FUZ [biosamplesummary="Homo sapiens K562" and target="RNF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN062GAH|/analyses/ENCAN062GAH/} has in progress subobject document {1b7dfe79-5aa8-485f-8f0c-df199e7c4a5c|/documents/1b7dfe79-5aa8-485f-8f0c-df199e7c4a5c/} audit_internal_action: Released analysis {ENCAN062GAH|/analyses/ENCAN062GAH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF285FVC|/files/ENCFF285FVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF285FVC|/files/ENCFF285FVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.64. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF409SDU|/files/ENCFF409SDU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 4.22. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR138FUZ | float |
TF_ChIP-seq_ENCSR138FUZ |
TF_ChIP-seq ENCSR138FUZ [biosample_summary="Homo sapiens K562" and target="RNF2"]
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[6.03, 240] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF409SDU.bed.gz | 87.66 KB | 44b96e2ad0e6caef34354d60e988fbca |
| ENCFF409SDU.bed.gz.dvc | 99.0 B | d87a56fb4816954cadca453dafed0315 |
| ENCFF409SDU.tabix.bed.gz | 60.23 KB | 538813c35c3197b96dc2b4cda1ac3ac1 |
| ENCFF409SDU.tabix.bed.gz.dvc | 105.0 B | 62c45e39a9b793b80796f3bc82204b94 |
| ENCFF409SDU.tabix.bed.gz.tbi | 42.46 KB | fbe04d05f253f8adb214a8db02d6f67b |
| ENCFF409SDU.tabix.bed.gz.tbi.dvc | 109.0 B | 005da1f20ecb01aa6ece51a63d260592 |
| genomic_resource.yaml | 3.4 KB | c1300d6b23be1c67c5230108054421f6 |
| genomic_resource_original.yaml | 3.31 KB | a04b4818f98892d777d624e90a23857d |
| statistics/ |