TF_ChIP-seq_ENCSR137ZMQ
TF_ChIP-seq ENCSR137ZMQ [biosample_summary="Homo sapiens K562" and target="REST"]
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| Id: | TF_ChIP-seq/ENCSR137ZMQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR137ZMQ [biosamplesummary="Homo sapiens K562" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN809ZYL|/analyses/ENCAN809ZYL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF686NWE|/files/ENCFF686NWE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF686NWE|/files/ENCFF686NWE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 4.78. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF432NDF|/files/ENCFF432NDF/}, {ENCFF750YVW|/files/ENCFF750YVW/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF895QLA|/files/ENCFF895QLA/}, {ENCFF120MVT|/files/ENCFF120MVT/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.20. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR137ZMQ | float |
TF_ChIP-seq_ENCSR137ZMQ |
TF_ChIP-seq ENCSR137ZMQ [biosample_summary="Homo sapiens K562" and target="REST"]
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[34.9, 3.53e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF895QLA.bed.gz | 749.28 KB | 566a637ff871d08a8eb27aa1153826fb |
| ENCFF895QLA.bed.gz.dvc | 100.0 B | 31791e419011611f6de8b696b8c34f7e |
| ENCFF895QLA.tabix.bed.gz | 588.66 KB | 8d054803f21a596ad78cf5f753df603a |
| ENCFF895QLA.tabix.bed.gz.dvc | 106.0 B | b6f70efbac02e5a41c266b3c198d64d7 |
| ENCFF895QLA.tabix.bed.gz.tbi | 279.36 KB | 75b8dbc054f49a30887632a8def21466 |
| ENCFF895QLA.tabix.bed.gz.tbi.dvc | 110.0 B | c64ead90a4219e403d55adb84541a878 |
| genomic_resource.yaml | 3.77 KB | 3c77ae87366657c2b5122ab6a9a514ad |
| genomic_resource_original.yaml | 3.68 KB | 88d8eb73e6b0cca27cca3971e9e75484 |
| statistics/ |