TF_ChIP-seq_ENCSR133DMU
TF_ChIP-seq ENCSR133DMU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RERE" and target="RERE"]
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| Id: | TF_ChIP-seq/ENCSR133DMU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR133DMU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RERE" and target="RERE"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RERE output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN664LWV|/analyses/ENCAN664LWV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF866RTF|/files/ENCFF866RTF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF866RTF|/files/ENCFF866RTF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF157XBU|/files/ENCFF157XBU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF157XBU|/files/ENCFF157XBU/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.82. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF473NCJ|/files/ENCFF473NCJ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 2.47. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR133DMU | float |
TF_ChIP-seq_ENCSR133DMU |
TF_ChIP-seq ENCSR133DMU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RERE" and target="RERE"]
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[10.6, 288] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF473NCJ.bed.gz | 57.4 KB | 1d9e0bcd88f84d61c4c9e3894fe480ac |
| ENCFF473NCJ.bed.gz.dvc | 99.0 B | a0cf3f2e169cf81cdb126a71d8be916b |
| ENCFF473NCJ.tabix.bed.gz | 40.72 KB | 8d77b635d0fc44fb40ae2ae077d0a3c2 |
| ENCFF473NCJ.tabix.bed.gz.dvc | 105.0 B | 1636d62cdc64fde541519953d4a46e98 |
| ENCFF473NCJ.tabix.bed.gz.tbi | 26.89 KB | d0aee4b9c3c9ef859060c865d867cd8a |
| ENCFF473NCJ.tabix.bed.gz.tbi.dvc | 109.0 B | 77b9bb815fa03434e3317e4de7bbb96c |
| genomic_resource.yaml | 4.74 KB | 2d0aac0d736fa1bc678f11517584ea87 |
| genomic_resource_original.yaml | 4.58 KB | 0f731df14abc22a78b7137012b860751 |
| statistics/ |