TF_ChIP-seq_ENCSR130ZAR
TF_ChIP-seq ENCSR130ZAR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691" and target="ZNF691"]
×
| Id: | TF_ChIP-seq/ENCSR130ZAR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR130ZAR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691" and target="ZNF691"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN712UHX|/analyses/ENCAN712UHX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN712UHX|/analyses/ENCAN712UHX/} has in progress subobject document {a78537a2-0b85-41c6-87c7-ec1a03379bff|/documents/a78537a2-0b85-41c6-87c7-ec1a03379bff/} audit_warning: Processed alignments file {ENCFF498TAQ|/files/ENCFF498TAQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18678824 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF691-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF720ECW|/files/ENCFF720ECW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF720ECW|/files/ENCFF720ECW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.24. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF498TAQ|/files/ENCFF498TAQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF498TAQ|/files/ENCFF498TAQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF296WYX|/files/ENCFF296WYX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 3.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF427OHT|/files/ENCFF427OHT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.31 and a self consistency ratio of 3.98. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR130ZAR | float |
TF_ChIP-seq_ENCSR130ZAR |
TF_ChIP-seq ENCSR130ZAR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF691" and target="ZNF691"]
|
|
[8.17, 684] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF296WYX.bed.gz | 335.65 KB | d68dabe5064472c6cbf4b71f6bfdc576 |
| ENCFF296WYX.bed.gz.dvc | 100.0 B | ee1708011f487c40d4fe145b02cb2c70 |
| ENCFF296WYX.tabix.bed.gz | 262.42 KB | 7b33b46418cb505b061230557008e633 |
| ENCFF296WYX.tabix.bed.gz.dvc | 106.0 B | 18a277e988532420ccb35fb780f7e0f1 |
| ENCFF296WYX.tabix.bed.gz.tbi | 108.52 KB | 475c7c18f3f6dc1c7ae31ab622917db5 |
| ENCFF296WYX.tabix.bed.gz.tbi.dvc | 110.0 B | 72372e4f5f92b81e41f84fc41ed82a68 |
| genomic_resource.yaml | 5.98 KB | f5cd22a0cba938eccdd9ffe3f48751a3 |
| genomic_resource_original.yaml | 5.81 KB | 005ae1cb2777ee73f0c26dbb6b4dae8e |
| statistics/ |