| Id: | TF_ChIP-seq/ENCSR130NZQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR130NZQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4" and target="PRDM4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN368JTK|/analyses/ENCAN368JTK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF666ISN|/files/ENCFF666ISN/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.36. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR130NZQ | float |
TF_ChIP-seq_ENCSR130NZQ |
TF_ChIP-seq ENCSR130NZQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PRDM4" and target="PRDM4"]
|
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[5.88, 641] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF666ISN.bed.gz | 47.6 KB | 22ddccecb52f19a0adf59938a56f6fdc |
| ENCFF666ISN.bed.gz.dvc | 99.0 B | c4d60454b3b374b0d297aa0b9a6ca2fa |
| ENCFF666ISN.tabix.bed.gz | 35.21 KB | c74168df99725867244f1aa731c6df8b |
| ENCFF666ISN.tabix.bed.gz.dvc | 105.0 B | 1dbdb5b357dc48869fb06e8dd45ca786 |
| ENCFF666ISN.tabix.bed.gz.tbi | 26.25 KB | 1c7e90f7325635d6d3a3859dcf4f35ff |
| ENCFF666ISN.tabix.bed.gz.tbi.dvc | 109.0 B | 30936ae424b60e8cb753cf4527cdf906 |
| genomic_resource.yaml | 2.22 KB | a363aee72ef609bd6d1f40ae561c33b7 |
| genomic_resource_original.yaml | 2.06 KB | dd7493ac3559fb330e44c4bb5b5f9ac3 |
| statistics/ |