TF_ChIP-seq_ENCSR128KLX
TF_ChIP-seq ENCSR128KLX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6" and target="NR2F6"]
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| Id: | TF_ChIP-seq/ENCSR128KLX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR128KLX [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6" and target="NR2F6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN470FCZ|/analyses/ENCAN470FCZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN470FCZ|/analyses/ENCAN470FCZ/} has in progress subobject document {62431b85-5102-4fc8-b97e-83258b02a5ae|/documents/62431b85-5102-4fc8-b97e-83258b02a5ae/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF954MPW|/files/ENCFF954MPW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF954MPW|/files/ENCFF954MPW/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR128KLX | float |
TF_ChIP-seq_ENCSR128KLX |
TF_ChIP-seq ENCSR128KLX [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NR2F6" and target="NR2F6"]
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[18.9, 654] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF647RGI.bed.gz | 46.15 KB | 868a5c41b6325d56edd3dac6a2f08a79 |
| ENCFF647RGI.bed.gz.dvc | 99.0 B | 032f53079c602f51a7462571356e652a |
| ENCFF647RGI.tabix.bed.gz | 29.42 KB | b6ef6f12803e5be6c02170fcf666d276 |
| ENCFF647RGI.tabix.bed.gz.dvc | 105.0 B | d7862cad95b35d9569d005f5835de177 |
| ENCFF647RGI.tabix.bed.gz.tbi | 24.24 KB | 5c7753a5536ceb62db7a919c977cdd15 |
| ENCFF647RGI.tabix.bed.gz.tbi.dvc | 109.0 B | 3a9c8ba1b29986f8c01541276c2d0884 |
| genomic_resource.yaml | 3.17 KB | 37d44a66d7b7c0ff06c694e57152f3f1 |
| genomic_resource_original.yaml | 3.01 KB | c3f1ef595fb1bd07c4c6073b488055ac |
| statistics/ |