TF_ChIP-seq_ENCSR127NBZ
TF_ChIP-seq ENCSR127NBZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG" and target="ERG"]
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| Id: | TF_ChIP-seq/ENCSR127NBZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR127NBZ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG" and target="ERG"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ERG output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN141PBN|/analyses/ENCAN141PBN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF966HMI|/files/ENCFF966HMI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF966HMI|/files/ENCFF966HMI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF687RHZ|/files/ENCFF687RHZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF687RHZ|/files/ENCFF687RHZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR127NBZ | float |
TF_ChIP-seq_ENCSR127NBZ |
TF_ChIP-seq ENCSR127NBZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ERG" and target="ERG"]
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[14.6, 1.39e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF910CYH.bed.gz | 60.29 KB | 99314a5d5d990fb8372170950d61caec |
| ENCFF910CYH.bed.gz.dvc | 99.0 B | 762bb347e888bc671249908e28c7f45a |
| ENCFF910CYH.tabix.bed.gz | 38.57 KB | a0d3c83aae474630f6491f082513af53 |
| ENCFF910CYH.tabix.bed.gz.dvc | 105.0 B | 297c36c840220d3113392428efb732f3 |
| ENCFF910CYH.tabix.bed.gz.tbi | 27.86 KB | cdb2b106f4a11cfc5c52c45c66dc40ff |
| ENCFF910CYH.tabix.bed.gz.tbi.dvc | 109.0 B | 425e7a3c392ce25be7cf10e8f33b2327 |
| genomic_resource.yaml | 4.21 KB | b540204c02dd3fedf5656b2b9501e334 |
| genomic_resource_original.yaml | 4.06 KB | c01b2662698351981a11d1263784f69c |
| statistics/ |