TF_ChIP-seq_ENCSR127IHN
TF_ChIP-seq ENCSR127IHN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737" and target="ZNF737"]
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| Id: | TF_ChIP-seq/ENCSR127IHN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR127IHN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737" and target="ZNF737"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN134IPA|/analyses/ENCAN134IPA/} has in progress subobject document {fa37cd03-13da-4785-9fe5-5e5d1263e980|/documents/fa37cd03-13da-4785-9fe5-5e5d1263e980/} audit_internal_action: Released analysis {ENCAN134IPA|/analyses/ENCAN134IPA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF930WQQ|/files/ENCFF930WQQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF930WQQ|/files/ENCFF930WQQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.48. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF212AUB|/files/ENCFF212AUB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF212AUB|/files/ENCFF212AUB/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.63. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF024LQZ|/files/ENCFF024LQZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.70 and a self consistency ratio of 3.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF660NHX|/files/ENCFF660NHX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.70 and a self consistency ratio of 3.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR127IHN | float |
TF_ChIP-seq_ENCSR127IHN |
TF_ChIP-seq ENCSR127IHN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF737" and target="ZNF737"]
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[12.8, 487] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF024LQZ.bed.gz | 92.44 KB | 9b857e36490325e8759841c160b54f95 |
| ENCFF024LQZ.bed.gz.dvc | 99.0 B | 192f2a22be9afda7005ac084810bd0e3 |
| ENCFF024LQZ.tabix.bed.gz | 65.81 KB | 5202f3137567b43b4a13ad2e1854c927 |
| ENCFF024LQZ.tabix.bed.gz.dvc | 105.0 B | 72875794d1edb9a3b8cd09e973959b59 |
| ENCFF024LQZ.tabix.bed.gz.tbi | 39.9 KB | b1c9b8b582844cc90edf66f389df7149 |
| ENCFF024LQZ.tabix.bed.gz.tbi.dvc | 109.0 B | aca4022f0e0951fdeffd4ce1259fb369 |
| genomic_resource.yaml | 5.49 KB | c82207ca6b76233276b5da8829bfe953 |
| genomic_resource_original.yaml | 5.33 KB | 1a0f7a5bb8d653c1479f80809275d938 |
| statistics/ |