TF_ChIP-seq_ENCSR126YJQ
TF_ChIP-seq ENCSR126YJQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"]
×
| Id: | TF_ChIP-seq/ENCSR126YJQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR126YJQ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN463LTF|/analyses/ENCAN463LTF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN463LTF|/analyses/ENCAN463LTF/} has in progress subobject document {77cce74e-1e1b-4d7a-9da3-68bc1c833057|/documents/77cce74e-1e1b-4d7a-9da3-68bc1c833057/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF239OYN|/files/ENCFF239OYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF239OYN|/files/ENCFF239OYN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.32. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF882PJT|/files/ENCFF882PJT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF882PJT|/files/ENCFF882PJT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.60. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR126YJQ | float |
TF_ChIP-seq_ENCSR126YJQ |
TF_ChIP-seq ENCSR126YJQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20A" and target="HMG20A"]
|
|
[15.7, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF118ATD.bed.gz | 25.46 KB | 5d57b567c4866f3438531000206a49a4 |
| ENCFF118ATD.bed.gz.dvc | 99.0 B | a1448ad60f2dcd8f5c7b3a624c851df4 |
| ENCFF118ATD.tabix.bed.gz | 16.18 KB | cbaaa7508db6bc3caa0e4283c6e242d5 |
| ENCFF118ATD.tabix.bed.gz.dvc | 105.0 B | 52ff88ae06c662fe4f2f3005cbfd24c8 |
| ENCFF118ATD.tabix.bed.gz.tbi | 16.42 KB | 16a060133f81615dc224e609cc18c1e3 |
| ENCFF118ATD.tabix.bed.gz.tbi.dvc | 109.0 B | 3d0924d04d0e134343f0146e8fbd2db2 |
| genomic_resource.yaml | 4.46 KB | 548434edbefad61ebe44eafd7722e86a |
| genomic_resource_original.yaml | 4.3 KB | 6fb03dc6399eed291351afea28690257 |
| statistics/ |