TF_ChIP-seq_ENCSR126FZN
TF_ChIP-seq ENCSR126FZN [biosample_summary="Homo sapiens K562 stably expressing CAVIN1" and target="PTRF"]
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| Id: | TF_ChIP-seq/ENCSR126FZN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR126FZN [biosamplesummary="Homo sapiens K562 stably expressing CAVIN1" and target="PTRF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged CAVIN1 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN579YVA|/analyses/ENCAN579YVA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF024MPE|/files/ENCFF024MPE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF024MPE|/files/ENCFF024MPE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR126FZN | float |
TF_ChIP-seq_ENCSR126FZN |
TF_ChIP-seq ENCSR126FZN [biosample_summary="Homo sapiens K562 stably expressing CAVIN1" and target="PTRF"]
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[12.9, 2.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF007DKB.bed.gz | 95.03 KB | e43f9679c5db6d500d389acadd52871e |
| ENCFF007DKB.bed.gz.dvc | 99.0 B | 7e05573a1ca91fccee579a2db27124af |
| ENCFF007DKB.tabix.bed.gz | 64.31 KB | 8915393def00cb717bc990fa24076893 |
| ENCFF007DKB.tabix.bed.gz.dvc | 105.0 B | ecfc624d929f0d331e68166e04ce82cd |
| ENCFF007DKB.tabix.bed.gz.tbi | 42.53 KB | 4968d7b3a2254d52cf9aba1abb9042b5 |
| ENCFF007DKB.tabix.bed.gz.tbi.dvc | 109.0 B | 405fbfa3fbbfae13045bd5a8d52f1882 |
| genomic_resource.yaml | 2.74 KB | 4a989fb8939d7585b85a75ad776546a5 |
| genomic_resource_original.yaml | 2.63 KB | 05830f56cebe1a88daded381f185e50f |
| statistics/ |