TF_ChIP-seq_ENCSR125RFR
TF_ChIP-seq ENCSR125RFR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"]
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| Id: | TF_ChIP-seq/ENCSR125RFR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR125RFR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ATF6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN308NZF|/analyses/ENCAN308NZF/} has in progress subobject document {c29a650f-c22d-4717-9138-f7b0bd72af52|/documents/c29a650f-c22d-4717-9138-f7b0bd72af52/} audit_internal_action: Released analysis {ENCAN308NZF|/analyses/ENCAN308NZF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF794UGS|/files/ENCFF794UGS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF794UGS|/files/ENCFF794UGS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.59. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF279IPQ|/files/ENCFF279IPQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF279IPQ|/files/ENCFF279IPQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.03. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR125RFR | float |
TF_ChIP-seq_ENCSR125RFR |
TF_ChIP-seq ENCSR125RFR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ATF6" and target="ATF6"]
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[11.6, 456] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF863ZFH.bed.gz | 148.54 KB | 7dba139384a66c92d2ee77041f4fc9d2 |
| ENCFF863ZFH.bed.gz.dvc | 100.0 B | d0bbbdc74a6f0895661ef5f602e9139a |
| ENCFF863ZFH.tabix.bed.gz | 110.42 KB | 960a52e71451802796f7937eb40b5a1f |
| ENCFF863ZFH.tabix.bed.gz.dvc | 106.0 B | e15096e0425a63d5f0b9c119525fc3e1 |
| ENCFF863ZFH.tabix.bed.gz.tbi | 55.83 KB | d5f18673b930be23dd2400e3c718e4ba |
| ENCFF863ZFH.tabix.bed.gz.tbi.dvc | 109.0 B | 2c82ddd6b7cd5c0b877b2355e38ba2ad |
| genomic_resource.yaml | 4.43 KB | a59b2a5f8e172be63f7bc1d649c01eef |
| genomic_resource_original.yaml | 4.27 KB | dd664b1257c3bb357714c0dc2d59804b |
| statistics/ |