TF_ChIP-seq_ENCSR125NBL
TF_ChIP-seq ENCSR125NBL [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR125NBL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR125NBL [biosamplesummary="Homo sapiens neural progenitor cell originated from H9" and target="CTCF"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN738JVM|/analyses/ENCAN738JVM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF379RWQ|/files/ENCFF379RWQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF379RWQ|/files/ENCFF379RWQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF748HWO|/files/ENCFF748HWO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF748HWO|/files/ENCFF748HWO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR125NBL | float |
TF_ChIP-seq_ENCSR125NBL |
TF_ChIP-seq ENCSR125NBL [biosample_summary="Homo sapiens neural progenitor cell originated from H9" and target="CTCF"]
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[8.12, 683] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF072ZEU.bed.gz | 1.0 MB | 1aeb7830409a87e0443bd93fbd773235 |
| ENCFF072ZEU.bed.gz.dvc | 101.0 B | 7edbecd6000cbf52507377fc3c447dc8 |
| ENCFF072ZEU.tabix.bed.gz | 759.13 KB | 64557252a5e5e1dfdcc3140fa7c07ad7 |
| ENCFF072ZEU.tabix.bed.gz.dvc | 106.0 B | 51930e721f3d242f063035724c0bbf38 |
| ENCFF072ZEU.tabix.bed.gz.tbi | 360.94 KB | 8bf72c51f1e7b03b7f7f85bde09345b4 |
| ENCFF072ZEU.tabix.bed.gz.tbi.dvc | 110.0 B | 440ddbb4b9c32c569058b320ec1393b9 |
| genomic_resource.yaml | 4.0 KB | 5f39cb6c077f12a49f60aa7df31b15b8 |
| genomic_resource_original.yaml | 3.87 KB | d72112ce5a83ee4b5bda776b467a03e7 |
| statistics/ |