TF_ChIP-seq_ENCSR124XCX
TF_ChIP-seq ENCSR124XCX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRIM24" and target="TRIM24"]
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| Id: | TF_ChIP-seq/ENCSR124XCX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR124XCX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRIM24" and target="TRIM24"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TRIM24 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN566MIS|/analyses/ENCAN566MIS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF715IJL|/files/ENCFF715IJL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF715IJL|/files/ENCFF715IJL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.67. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF617LSN|/files/ENCFF617LSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF617LSN|/files/ENCFF617LSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.43. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR124XCX | float |
TF_ChIP-seq_ENCSR124XCX |
TF_ChIP-seq ENCSR124XCX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TRIM24" and target="TRIM24"]
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[8.37, 263] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF227RXB.bed.gz | 78.6 KB | 92f4d1a8338104d8a3a3c80b61ce122e |
| ENCFF227RXB.bed.gz.dvc | 99.0 B | e28bd15fa5eba0c5cccc0133e0fc68e4 |
| ENCFF227RXB.tabix.bed.gz | 54.02 KB | eddc3f811363b9dd237288436be8ee80 |
| ENCFF227RXB.tabix.bed.gz.dvc | 105.0 B | 7f92143585c4a453f1b7df0c5a33210b |
| ENCFF227RXB.tabix.bed.gz.tbi | 38.97 KB | bf9e1b8283573a4a374b256d0f9b1075 |
| ENCFF227RXB.tabix.bed.gz.tbi.dvc | 109.0 B | 132b54b48c5501795c627917d4811f76 |
| genomic_resource.yaml | 4.24 KB | 25512e3b825816848ae1fd60880e716b |
| genomic_resource_original.yaml | 4.07 KB | 76670a4a71046371afb7eb422903e48e |
| statistics/ |