| Id: | TF_ChIP-seq/ENCSR124QQJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR124QQJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B" and target="ZNF354B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN665TDD|/analyses/ENCAN665TDD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF482ZBC|/files/ENCFF482ZBC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF482ZBC|/files/ENCFF482ZBC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.67. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF862MVM|/files/ENCFF862MVM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF862MVM|/files/ENCFF862MVM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.83. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR124QQJ | float |
TF_ChIP-seq_ENCSR124QQJ |
TF_ChIP-seq ENCSR124QQJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF354B" and target="ZNF354B"]
|
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[13.1, 395] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF425JPL.bed.gz | 122.65 KB | cd51d7fe839865533d055bf190e1dec5 |
| ENCFF425JPL.bed.gz.dvc | 100.0 B | 9b5cece6ada7c039c525e6bc221b9964 |
| ENCFF425JPL.tabix.bed.gz | 86.77 KB | 49022d67cfb07127caab317fb10a70f6 |
| ENCFF425JPL.tabix.bed.gz.dvc | 105.0 B | d64a601f03d4054deef912bd95ce0f87 |
| ENCFF425JPL.tabix.bed.gz.tbi | 49.92 KB | 40868701dcb39feddd37bf48f2eedecc |
| ENCFF425JPL.tabix.bed.gz.tbi.dvc | 109.0 B | 9e5c5b822655cfcd55cd6bfcce1b9770 |
| genomic_resource.yaml | 4.25 KB | 6ecbbde9716ce247ee4945357cc6c488 |
| genomic_resource_original.yaml | 4.08 KB | 11b45a9d070fd9dc4086df619c4e2a9e |
| statistics/ |