TF_ChIP-seq_ENCSR119VCX
TF_ChIP-seq ENCSR119VCX [biosample_summary="Homo sapiens K562" and target="PHF21A"]
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| Id: | TF_ChIP-seq/ENCSR119VCX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR119VCX [biosamplesummary="Homo sapiens K562" and target="PHF21A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN880ZQL|/analyses/ENCAN880ZQL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF657UVA|/files/ENCFF657UVA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF118SOA|/files/ENCFF118SOA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19438356 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PHF21A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF657UVA|/files/ENCFF657UVA/}, {ENCFF552BXT|/files/ENCFF552BXT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.00 and a self consistency ratio of 3.63. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF836PQF|/files/ENCFF836PQF/}, {ENCFF745LZA|/files/ENCFF745LZA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.00 and a self consistency ratio of 3.63. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR119VCX | float |
TF_ChIP-seq_ENCSR119VCX |
TF_ChIP-seq ENCSR119VCX [biosample_summary="Homo sapiens K562" and target="PHF21A"]
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[11.6, 2.36e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF657UVA.bed.gz | 169.46 KB | 3f01baa89ba091ecc16de02e36e27eb7 |
| ENCFF657UVA.bed.gz.dvc | 100.0 B | c27e1e1826e42418f180ac5227970cdf |
| ENCFF657UVA.tabix.bed.gz | 112.21 KB | 742265ec74836e6df3d6c780b3f9a53d |
| ENCFF657UVA.tabix.bed.gz.dvc | 106.0 B | 824166a67c0efde5539890e8cf9ec54a |
| ENCFF657UVA.tabix.bed.gz.tbi | 71.55 KB | 48be602ed81232192b8ea7fe6257a870 |
| ENCFF657UVA.tabix.bed.gz.tbi.dvc | 109.0 B | f2286a8405fe3459d311466f9fffe00e |
| genomic_resource.yaml | 3.16 KB | 20cdc4b726a90a5d2ecd69e4e60bc4c8 |
| genomic_resource_original.yaml | 3.06 KB | 61e56956ee91b3e72dfdb87394dfe345 |
| statistics/ |