TF_ChIP-seq_ENCSR119ULQ
TF_ChIP-seq ENCSR119ULQ [biosample_summary="Homo sapiens K562" and target="NCOA4"]
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| Id: | TF_ChIP-seq/ENCSR119ULQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR119ULQ [biosamplesummary="Homo sapiens K562" and target="NCOA4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF749HKV|/files/ENCFF749HKV/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN251GII|/analyses/ENCAN251GII/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF958FJQ|/files/ENCFF958FJQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF958FJQ|/files/ENCFF958FJQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.42. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF749HKV|/files/ENCFF749HKV/}, {ENCFF176RLH|/files/ENCFF176RLH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.35 and a self consistency ratio of 1.56. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF981VCQ|/files/ENCFF981VCQ/}, {ENCFF938GHN|/files/ENCFF938GHN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.35 and a self consistency ratio of 1.56. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR119ULQ | float |
TF_ChIP-seq_ENCSR119ULQ |
TF_ChIP-seq ENCSR119ULQ [biosample_summary="Homo sapiens K562" and target="NCOA4"]
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[13.2, 894] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF749HKV.bed.gz | 56.15 KB | e8091a198d607ff061a1a8ec86192d37 |
| ENCFF749HKV.bed.gz.dvc | 99.0 B | 904b61ba16b1538f9d8e4c028a7c96fc |
| ENCFF749HKV.tabix.bed.gz | 36.45 KB | 0ceb2174975955d28293ba92d99babd9 |
| ENCFF749HKV.tabix.bed.gz.dvc | 105.0 B | 7302a5739b0cc3708c960814c3c7a1b3 |
| ENCFF749HKV.tabix.bed.gz.tbi | 31.28 KB | df985e5b885203a2ce7141abbf269df5 |
| ENCFF749HKV.tabix.bed.gz.tbi.dvc | 109.0 B | 0ca4ae76e571a3f61c599916dd506359 |
| genomic_resource.yaml | 4.51 KB | fb5a379b949a0eb64f453070ca1fe6d0 |
| genomic_resource_original.yaml | 4.41 KB | f4409e5f43a6b767bd0070bebaa8a056 |
| statistics/ |