| Id: | TF_ChIP-seq/ENCSR118LGS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR118LGS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2" and target="TSC22D2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN556HGU|/analyses/ENCAN556HGU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN556HGU|/analyses/ENCAN556HGU/} has in progress subobject document {d95a0d8e-ea4c-45bf-925d-a0f0d3a30a57|/documents/d95a0d8e-ea4c-45bf-925d-a0f0d3a30a57/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF334KGV|/files/ENCFF334KGV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF334KGV|/files/ENCFF334KGV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.12. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF278CIM|/files/ENCFF278CIM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 3.93. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF869LPB|/files/ENCFF869LPB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 3.93. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR118LGS | float |
TF_ChIP-seq_ENCSR118LGS |
TF_ChIP-seq ENCSR118LGS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TSC22D2" and target="TSC22D2"]
|
 |
[10.3, 479] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF278CIM.bed.gz | 211.62 KB | 7dc1852898023da2cc412736de6a29e3 |
| ENCFF278CIM.bed.gz.dvc | 100.0 B | 541d5649855d351877fc8b641269970c |
| ENCFF278CIM.tabix.bed.gz | 154.02 KB | a5bce3d2f570cf631628703ab5c883dc |
| ENCFF278CIM.tabix.bed.gz.dvc | 106.0 B | 4dd3cd033d954e3052835f0a96cb651b |
| ENCFF278CIM.tabix.bed.gz.tbi | 79.93 KB | 8948ecc966b49de1aabf60afdece9341 |
| ENCFF278CIM.tabix.bed.gz.tbi.dvc | 109.0 B | 8b9619877bfb7aeb9a17cb2193390c95 |
| genomic_resource.yaml | 4.23 KB | 17fe38c7d2fbc1474bf387c310313981 |
| genomic_resource_original.yaml | 4.07 KB | 5c1cc04ec2a5998d91897606a1547d8a |
| statistics/ |