TF_ChIP-seq_ENCSR117XJA
TF_ChIP-seq ENCSR117XJA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF790" and target="ZNF790"]
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| Id: | TF_ChIP-seq/ENCSR117XJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR117XJA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF790" and target="ZNF790"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF790 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN241MKV|/analyses/ENCAN241MKV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF169ULK|/files/ENCFF169ULK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF169ULK|/files/ENCFF169ULK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.22. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF968JSW|/files/ENCFF968JSW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF968JSW|/files/ENCFF968JSW/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.50. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF016EAV|/files/ENCFF016EAV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 5.49. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR117XJA | float |
TF_ChIP-seq_ENCSR117XJA |
TF_ChIP-seq ENCSR117XJA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF790" and target="ZNF790"]
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[9.13, 502] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF016EAV.bed.gz | 186.54 KB | 2382a88ee180416f94aebf4c52f1871a |
| ENCFF016EAV.bed.gz.dvc | 100.0 B | 563f67514bf0268b3997a5d706e09bad |
| ENCFF016EAV.tabix.bed.gz | 148.08 KB | c0edb818a1f2399d089c6ec8f91cf6ca |
| ENCFF016EAV.tabix.bed.gz.dvc | 106.0 B | 3c918aa299767c1c9601ce0ad220d822 |
| ENCFF016EAV.tabix.bed.gz.tbi | 64.01 KB | 1a2aa9f903916613018dd1b4d98a6dc9 |
| ENCFF016EAV.tabix.bed.gz.tbi.dvc | 109.0 B | 692a1766ca2daeea1ef9dc0fc2ae198a |
| genomic_resource.yaml | 4.76 KB | 73357c66a786be928f9113b949229ab7 |
| genomic_resource_original.yaml | 4.59 KB | 26979aa3a27b4dd7bc6b7273942f3079 |
| statistics/ |