TF_ChIP-seq_ENCSR117KWH
TF_ChIP-seq ENCSR117KWH [biosample_summary="Homo sapiens GM12878" and target="ZNF207"]
×
| Id: | TF_ChIP-seq/ENCSR117KWH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR117KWH [biosamplesummary="Homo sapiens GM12878" and target="ZNF207"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN506CPT|/analyses/ENCAN506CPT/} has in progress subobject document {4e5fc539-e818-4e1b-a445-9b9409ef8e39|/documents/4e5fc539-e818-4e1b-a445-9b9409ef8e39/} audit_internal_action: Released analysis {ENCAN506CPT|/analyses/ENCAN506CPT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF184HZS|/files/ENCFF184HZS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF184HZS|/files/ENCFF184HZS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF634UNM|/files/ENCFF634UNM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF634UNM|/files/ENCFF634UNM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.05. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF854NOE|/files/ENCFF854NOE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.11 and a self consistency ratio of 2.52. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR117KWH | float |
TF_ChIP-seq_ENCSR117KWH |
TF_ChIP-seq ENCSR117KWH [biosample_summary="Homo sapiens GM12878" and target="ZNF207"]
|
|
[15.9, 273] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF854NOE.bed.gz | 195.69 KB | 32505e6a67af2276e9f74c92acc18610 |
| ENCFF854NOE.bed.gz.dvc | 100.0 B | f8c35ffb8725177783f9c4a34edec76c |
| ENCFF854NOE.tabix.bed.gz | 152.41 KB | 6369f6973a2b4e6c85ead55372c6ee6b |
| ENCFF854NOE.tabix.bed.gz.dvc | 106.0 B | 3f6d69cbce1782a017ae479037804430 |
| ENCFF854NOE.tabix.bed.gz.tbi | 77.91 KB | 49a062be1f8c1ce3785dabd256a28c62 |
| ENCFF854NOE.tabix.bed.gz.tbi.dvc | 109.0 B | 59543abbdc31ad90a622100efba236c8 |
| genomic_resource.yaml | 4.74 KB | 3541e9492e6adef131814c9e1f0c382c |
| genomic_resource_original.yaml | 4.64 KB | 96e3fd6c52f91a7a9a30a1796a090463 |
| statistics/ |