TF_ChIP-seq_ENCSR116NDV
TF_ChIP-seq ENCSR116NDV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"]
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| Id: | TF_ChIP-seq/ENCSR116NDV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR116NDV [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CBFB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN114ZUT|/analyses/ENCAN114ZUT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN114ZUT|/analyses/ENCAN114ZUT/} has in progress subobject document {ccdb9833-4b4a-4883-b079-797cba105756|/documents/ccdb9833-4b4a-4883-b079-797cba105756/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF892MMF|/files/ENCFF892MMF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF892MMF|/files/ENCFF892MMF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR116NDV | float |
TF_ChIP-seq_ENCSR116NDV |
TF_ChIP-seq ENCSR116NDV [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CBFB" and target="CBFB"]
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[13.7, 363] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF802NHC.bed.gz | 134.53 KB | ef3d6bc28f95c681e1285a11626c5fed |
| ENCFF802NHC.bed.gz.dvc | 100.0 B | 6db19fc46b603b113cdaf0d6223b877d |
| ENCFF802NHC.tabix.bed.gz | 96.89 KB | 12266530bed2bbafc7a76a079bfa0fdf |
| ENCFF802NHC.tabix.bed.gz.dvc | 105.0 B | 0ff8753833137a357c792c4fa20c09ca |
| ENCFF802NHC.tabix.bed.gz.tbi | 54.67 KB | 148a44744b43b17b37c94f254d7051ea |
| ENCFF802NHC.tabix.bed.gz.tbi.dvc | 109.0 B | 1387115840434e3a851e028ea0fda3b7 |
| genomic_resource.yaml | 3.17 KB | 4bcc0cb8f34ad820864f7b7233cbe007 |
| genomic_resource_original.yaml | 3.0 KB | adbc9852aace5391793dfe14affcdc78 |
| statistics/ |