TF_ChIP-seq_ENCSR116AKQ
TF_ChIP-seq ENCSR116AKQ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR116AKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR116AKQ [biosamplesummary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN941DCZ|/analyses/ENCAN941DCZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF508JHA|/files/ENCFF508JHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF508JHA|/files/ENCFF508JHA/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR116AKQ | float |
TF_ChIP-seq_ENCSR116AKQ |
TF_ChIP-seq ENCSR116AKQ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (21 years)" and target="CTCF"]
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[7.63, 245] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF758CQW.bed.gz | 583.98 KB | 909db5ee157d5b72505e3ba00f1b815d |
| ENCFF758CQW.bed.gz.dvc | 100.0 B | 347850e98c86e4f240af8ce82211c1a9 |
| ENCFF758CQW.tabix.bed.gz | 510.8 KB | d212c22277d190ce553cbb45016504d1 |
| ENCFF758CQW.tabix.bed.gz.dvc | 106.0 B | 6d791490264783324765b1274a32f4ff |
| ENCFF758CQW.tabix.bed.gz.tbi | 182.17 KB | 7c92f366c04ed71b835e76ed8c8d0484 |
| ENCFF758CQW.tabix.bed.gz.tbi.dvc | 110.0 B | eb806b91993c58c39c4dea87b54a5d51 |
| genomic_resource.yaml | 2.78 KB | f09078a2f100a99d2d327750ec02d143 |
| genomic_resource_original.yaml | 2.64 KB | 6588019bb32d13fa58b299a2b165ce3f |
| statistics/ |