| Id: | TF_ChIP-seq/ENCSR115QIT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR115QIT [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8" and target="ZKSCAN8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN951WIO|/analyses/ENCAN951WIO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF289TCZ|/files/ENCFF289TCZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF289TCZ|/files/ENCFF289TCZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR115QIT | float |
TF_ChIP-seq_ENCSR115QIT |
TF_ChIP-seq ENCSR115QIT [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZKSCAN8" and target="ZKSCAN8"]
|
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[10.9, 532] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF416MZE.bed.gz | 64.46 KB | 9ecfaa54562e6491e9d491cfac65acb7 |
| ENCFF416MZE.bed.gz.dvc | 99.0 B | 3b6924d7837fd40e596b2627ff16506e |
| ENCFF416MZE.tabix.bed.gz | 44.39 KB | d46673f162a458c05e5d21835bdc2432 |
| ENCFF416MZE.tabix.bed.gz.dvc | 105.0 B | cd80da7795592f214742aa9856d79947 |
| ENCFF416MZE.tabix.bed.gz.tbi | 34.75 KB | 0bfebbf91ba0e251652702dbae46c3be |
| ENCFF416MZE.tabix.bed.gz.tbi.dvc | 109.0 B | b93e26c706c6d7ee75cad210af3bca82 |
| genomic_resource.yaml | 2.98 KB | 176394040ccc61cc6f086e2f96242eab |
| genomic_resource_original.yaml | 2.81 KB | e99e92350a25afaaebe15b7b7aa44cb6 |
| statistics/ |