TF_ChIP-seq_ENCSR115LFG
TF_ChIP-seq ENCSR115LFG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF181" and target="ZNF181"]
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| Id: | TF_ChIP-seq/ENCSR115LFG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR115LFG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF181" and target="ZNF181"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF181 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN238LDX|/analyses/ENCAN238LDX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF383MXC|/files/ENCFF383MXC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF383MXC|/files/ENCFF383MXC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.34. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF885AWF|/files/ENCFF885AWF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF885AWF|/files/ENCFF885AWF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR115LFG | float |
TF_ChIP-seq_ENCSR115LFG |
TF_ChIP-seq ENCSR115LFG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF181" and target="ZNF181"]
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[11.4, 511] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF809NBM.bed.gz | 231.72 KB | 29ba13de8af429646a2d45d3e26a6ca7 |
| ENCFF809NBM.bed.gz.dvc | 100.0 B | 54f7cca726dc76f520407eed24dc935e |
| ENCFF809NBM.tabix.bed.gz | 170.3 KB | 2a75860b4f21024bbae328babe3ec552 |
| ENCFF809NBM.tabix.bed.gz.dvc | 106.0 B | 9fb411093f88101ac3c0fa86769fddc4 |
| ENCFF809NBM.tabix.bed.gz.tbi | 80.21 KB | a5ce9f3596d371cca5d82de247d5286a |
| ENCFF809NBM.tabix.bed.gz.tbi.dvc | 109.0 B | 5936b0150f6b70d0f0cbc9d24b9bf485 |
| genomic_resource.yaml | 4.24 KB | 4368120f2499a7b78e42a2295ef13da6 |
| genomic_resource_original.yaml | 4.07 KB | a5fdb39d2f982e6a269bc07d966ac702 |
| statistics/ |