TF_ChIP-seq_ENCSR115BLD
TF_ChIP-seq ENCSR115BLD [biosample_summary="Homo sapiens HepG2" and target="KDM1A"]
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| Id: | TF_ChIP-seq/ENCSR115BLD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR115BLD [biosamplesummary="Homo sapiens HepG2" and target="KDM1A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN598FUT|/analyses/ENCAN598FUT/} has in progress subobject document {ff320544-7c57-4bf4-98ed-5aafe7d332d2|/documents/ff320544-7c57-4bf4-98ed-5aafe7d332d2/} audit_internal_action: Released analysis {ENCAN598FUT|/analyses/ENCAN598FUT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF478CGB|/files/ENCFF478CGB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF478CGB|/files/ENCFF478CGB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF648RQB|/files/ENCFF648RQB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF648RQB|/files/ENCFF648RQB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.28. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR115BLD | float |
TF_ChIP-seq_ENCSR115BLD |
TF_ChIP-seq ENCSR115BLD [biosample_summary="Homo sapiens HepG2" and target="KDM1A"]
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[11.4, 726] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF439CGG.bed.gz | 882.88 KB | 4dc5d7971c3353300e0589c7e3f7b908 |
| ENCFF439CGG.bed.gz.dvc | 100.0 B | b18bb035983ae893771a62710aec82f8 |
| ENCFF439CGG.tabix.bed.gz | 632.06 KB | 22a30bf78781dd5da65052e86d1d7c81 |
| ENCFF439CGG.tabix.bed.gz.dvc | 106.0 B | 2c5e7492381dad90f0bbb7372a97951d |
| ENCFF439CGG.tabix.bed.gz.tbi | 204.61 KB | edbae196b0bc18ed5bb96cc1d6c97536 |
| ENCFF439CGG.tabix.bed.gz.tbi.dvc | 110.0 B | 7c70a627537d386cf1aee2a58f33ccd4 |
| genomic_resource.yaml | 4.19 KB | dc6039a043498f5a4ca85d9844a44969 |
| genomic_resource_original.yaml | 4.09 KB | a0c806951b0f51e265faa9e11d07705b |
| statistics/ |