TF_ChIP-seq_ENCSR115BBC
TF_ChIP-seq ENCSR115BBC [biosample_summary="Homo sapiens K562" and target="ASH1L"]
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| Id: | TF_ChIP-seq/ENCSR115BBC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR115BBC [biosamplesummary="Homo sapiens K562" and target="ASH1L"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN849YNL|/analyses/ENCAN849YNL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN849YNL|/analyses/ENCAN849YNL/} has in progress subobject document {0efd1f3a-da63-4711-8199-0be475bd276b|/documents/0efd1f3a-da63-4711-8199-0be475bd276b/} audit_warning: Processed alignments file {ENCFF888VPU|/files/ENCFF888VPU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19921463 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ASH1L-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF888VPU|/files/ENCFF888VPU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF888VPU|/files/ENCFF888VPU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.99. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF553IUR|/files/ENCFF553IUR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.53 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR115BBC | float |
TF_ChIP-seq_ENCSR115BBC |
TF_ChIP-seq ENCSR115BBC [biosample_summary="Homo sapiens K562" and target="ASH1L"]
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[15.5, 9.28e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF553IUR.bed.gz | 114.78 KB | c9d7e349371409615b048d8653727378 |
| ENCFF553IUR.bed.gz.dvc | 100.0 B | df3bb3da023ef73d85cdd043344af200 |
| ENCFF553IUR.tabix.bed.gz | 79.82 KB | 1ef5032820960b451908927c0fab2ada |
| ENCFF553IUR.tabix.bed.gz.dvc | 105.0 B | 98d8f240cb759afa31d04baadb313945 |
| ENCFF553IUR.tabix.bed.gz.tbi | 51.9 KB | 97dbdb14b1e30bfb7188cbfabd60f7d5 |
| ENCFF553IUR.tabix.bed.gz.tbi.dvc | 109.0 B | 83a871261432b594c231c1296c63819b |
| genomic_resource.yaml | 4.46 KB | aef46f81f360cb96869cdb3452bafc9a |
| genomic_resource_original.yaml | 4.36 KB | f5255539e497bc723dddf684f32afee2 |
| statistics/ |