TF_ChIP-seq_ENCSR110QIL
TF_ChIP-seq ENCSR110QIL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RORB" and target="RORB"]
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| Id: | TF_ChIP-seq/ENCSR110QIL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR110QIL [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RORB" and target="RORB"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RORB output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN490WHK|/analyses/ENCAN490WHK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF638NYF|/files/ENCFF638NYF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF638NYF|/files/ENCFF638NYF/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF614QWO|/files/ENCFF614QWO/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF614QWO|/files/ENCFF614QWO/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR110QIL | float |
TF_ChIP-seq_ENCSR110QIL |
TF_ChIP-seq ENCSR110QIL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens RORB" and target="RORB"]
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[19.3, 512] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF989FMK.bed.gz | 14.52 KB | 6b6c827d0c4a0f89ba676bd7a6d1c039 |
| ENCFF989FMK.bed.gz.dvc | 99.0 B | 725a72089439a214cff323dc7a0714ef |
| ENCFF989FMK.tabix.bed.gz | 8.97 KB | 0df386356d68a55f19952c02bfc8f8d9 |
| ENCFF989FMK.tabix.bed.gz.dvc | 104.0 B | 340d4ddc74488750c3fb4b6900ae0d65 |
| ENCFF989FMK.tabix.bed.gz.tbi | 11.17 KB | 8f6cca279e64240f4cc31cb7380e4d35 |
| ENCFF989FMK.tabix.bed.gz.tbi.dvc | 109.0 B | e126c979fe36ebb83f9cd9283a1a0341 |
| genomic_resource.yaml | 4.22 KB | 7b0196e69abc79ae3dace6ca453188f3 |
| genomic_resource_original.yaml | 4.06 KB | fcc208af2d688fc1585c71e8c19dd822 |
| statistics/ |