TF_ChIP-seq_ENCSR108MKR
TF_ChIP-seq ENCSR108MKR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MNX1" and target="MNX1"]
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| Id: | TF_ChIP-seq/ENCSR108MKR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR108MKR [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MNX1" and target="MNX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MNX1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN457RYH|/analyses/ENCAN457RYH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN457RYH|/analyses/ENCAN457RYH/} has in progress subobject document {fa6a8573-c630-468a-a9d6-3e4510bfd58c|/documents/fa6a8573-c630-468a-a9d6-3e4510bfd58c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF314HGZ|/files/ENCFF314HGZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF314HGZ|/files/ENCFF314HGZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365HGQ|/files/ENCFF365HGQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF365HGQ|/files/ENCFF365HGQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR108MKR | float |
TF_ChIP-seq_ENCSR108MKR |
TF_ChIP-seq ENCSR108MKR [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MNX1" and target="MNX1"]
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[13.4, 598] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF958FYM.bed.gz | 605.32 KB | 32c988286d8f822622b6c7b348da81f1 |
| ENCFF958FYM.bed.gz.dvc | 100.0 B | e03306e0dace13d52914810e55f37e71 |
| ENCFF958FYM.tabix.bed.gz | 514.31 KB | 830846ae273217a2cbd4939ddb1c4f76 |
| ENCFF958FYM.tabix.bed.gz.dvc | 106.0 B | 6558f8977ef83106ca89bed77159de04 |
| ENCFF958FYM.tabix.bed.gz.tbi | 157.6 KB | d7c818ea965f04e3c4983daea497c51f |
| ENCFF958FYM.tabix.bed.gz.tbi.dvc | 110.0 B | aeaf17c01bb047965f2f065ecb7faff1 |
| genomic_resource.yaml | 4.43 KB | 8dafc195ea08ced52b1197454c9438dc |
| genomic_resource_original.yaml | 4.27 KB | 84ab45b63e32815b48518dc7ba2af92a |
| statistics/ |