TF_ChIP-seq_ENCSR107RHZ
TF_ChIP-seq ENCSR107RHZ [biosample_summary="Homo sapiens K562" and target="YBX1"]
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| Id: | TF_ChIP-seq/ENCSR107RHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR107RHZ [biosamplesummary="Homo sapiens K562" and target="YBX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN404OEI|/analyses/ENCAN404OEI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF869CLO|/files/ENCFF869CLO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF869CLO|/files/ENCFF869CLO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.02. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF452VYJ|/files/ENCFF452VYJ/}, {ENCFF706LIT|/files/ENCFF706LIT/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.80 and a self consistency ratio of 1.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF015BVQ|/files/ENCFF015BVQ/}, {ENCFF876GPT|/files/ENCFF876GPT/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 2.80 and a self consistency ratio of 1.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR107RHZ | float |
TF_ChIP-seq_ENCSR107RHZ |
TF_ChIP-seq ENCSR107RHZ [biosample_summary="Homo sapiens K562" and target="YBX1"]
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[10.9, 316] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF706LIT.bed.gz | 26.29 KB | 1fde054e4ffdaa0d943623283ebc001a |
| ENCFF706LIT.bed.gz.dvc | 99.0 B | 05b128dcb455a35975cedb70d87b94a2 |
| ENCFF706LIT.tabix.bed.gz | 16.58 KB | ba2ae9cc2fc1c66995666e529b07b0b2 |
| ENCFF706LIT.tabix.bed.gz.dvc | 105.0 B | 2f4bf31fd1caaa58a7bca659ca3eab21 |
| ENCFF706LIT.tabix.bed.gz.tbi | 17.2 KB | 9b468c02fbf214009a5daf551a6f6611 |
| ENCFF706LIT.tabix.bed.gz.tbi.dvc | 109.0 B | 23bd530c8d2391c8f6a28c7943a0c138 |
| genomic_resource.yaml | 3.77 KB | d196ed7b8fc9fb8b658d57519cd32337 |
| genomic_resource_original.yaml | 3.68 KB | 4947f9c558f20a5b00c7b984f1b0e769 |
| statistics/ |