TF_ChIP-seq_ENCSR106FRG
TF_ChIP-seq ENCSR106FRG [biosample_summary="Homo sapiens K562" and target="TAL1"]
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| Id: | TF_ChIP-seq/ENCSR106FRG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR106FRG [biosamplesummary="Homo sapiens K562" and target="TAL1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN281KEN|/analyses/ENCAN281KEN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF389WLJ|/files/ENCFF389WLJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF389WLJ|/files/ENCFF389WLJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR106FRG | float |
TF_ChIP-seq_ENCSR106FRG |
TF_ChIP-seq ENCSR106FRG [biosample_summary="Homo sapiens K562" and target="TAL1"]
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[10.4, 1.93e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF284LRP.bed.gz | 479.34 KB | 3c526cb3b4923a306e8fa5fbc8fc4dd0 |
| ENCFF284LRP.bed.gz.dvc | 100.0 B | eb13bfa98c13bae4742050952009b885 |
| ENCFF284LRP.tabix.bed.gz | 341.86 KB | c9ba3a6633a9c961a1809238a34a16fd |
| ENCFF284LRP.tabix.bed.gz.dvc | 106.0 B | dd8f34aa5d1b6f4453f53379787387a6 |
| ENCFF284LRP.tabix.bed.gz.tbi | 178.65 KB | 02a1b7992e4e53e94c412493e2eaa4fd |
| ENCFF284LRP.tabix.bed.gz.tbi.dvc | 110.0 B | 2c23df8f933153a71db3ff5f91119dc7 |
| genomic_resource.yaml | 2.64 KB | 0cae48059b009c15b4e6254a656ba9fa |
| genomic_resource_original.yaml | 2.54 KB | 1937ef51bf63bf3d0ceab08b461d9d24 |
| statistics/ |