TF_ChIP-seq_ENCSR103SZL
TF_ChIP-seq ENCSR103SZL [biosample_summary="Homo sapiens HepG2" and target="TFAP4"]
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| Id: | TF_ChIP-seq/ENCSR103SZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR103SZL [biosamplesummary="Homo sapiens HepG2" and target="TFAP4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF912SQI|/files/ENCFF912SQI/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released file {ENCFF912SQI|/files/ENCFF912SQI/} has replaced subobject file {9ae6777e-268a-4fd9-b9ac-21239dde9002|/files/9ae6777e-268a-4fd9-b9ac-21239dde9002/} audit_internal_action: Archived analysis {ENCAN966NVP|/analyses/ENCAN966NVP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF319BJC|/files/ENCFF319BJC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16818599 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TFAP4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF967ZYC|/files/ENCFF967ZYC/}, {ENCFF454PKG|/files/ENCFF454PKG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.88 and a self consistency ratio of 4.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF912SQI|/files/ENCFF912SQI/}, {ENCFF696VDG|/files/ENCFF696VDG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.88 and a self consistency ratio of 4.94. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR103SZL | float |
TF_ChIP-seq_ENCSR103SZL |
TF_ChIP-seq ENCSR103SZL [biosample_summary="Homo sapiens HepG2" and target="TFAP4"]
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[5.75, 583] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF912SQI.bed.gz | 491.14 KB | 739a70dcbee45b647ec35975de8cfec9 |
| ENCFF912SQI.bed.gz.dvc | 100.0 B | 783ca6d93992dd0e631040d4f11d7983 |
| ENCFF912SQI.tabix.bed.gz | 362.98 KB | 583ac0621ac96f5294be9fa8d0c912d8 |
| ENCFF912SQI.tabix.bed.gz.dvc | 106.0 B | b443e0cd697090c3622f7dc974e01b68 |
| ENCFF912SQI.tabix.bed.gz.tbi | 162.61 KB | ae5ba8fe70756b756f3e9d327ad1f2b3 |
| ENCFF912SQI.tabix.bed.gz.tbi.dvc | 110.0 B | f38368d0c12e69c9847d3304dcfa057a |
| genomic_resource.yaml | 3.36 KB | fd8dab87d960728bf62597b0aca7b3bc |
| genomic_resource_original.yaml | 3.26 KB | 8be2334ebb1e537b5fed8a6cbc0c07c3 |
| statistics/ |