TF_ChIP-seq_ENCSR102YQB
TF_ChIP-seq ENCSR102YQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAX8" and target="PAX8"]
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| Id: | TF_ChIP-seq/ENCSR102YQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR102YQB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAX8" and target="PAX8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PAX8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN068GYT|/analyses/ENCAN068GYT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF857PXK|/files/ENCFF857PXK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF857PXK|/files/ENCFF857PXK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF797ZVN|/files/ENCFF797ZVN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF797ZVN|/files/ENCFF797ZVN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.92. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF748IDH|/files/ENCFF748IDH/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.56 and a self consistency ratio of 5.26. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR102YQB | float |
TF_ChIP-seq_ENCSR102YQB |
TF_ChIP-seq ENCSR102YQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens PAX8" and target="PAX8"]
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[8.39, 367] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF748IDH.bed.gz | 138.51 KB | af9f8df2bd8f3d60c95edce636738fd5 |
| ENCFF748IDH.bed.gz.dvc | 100.0 B | 35d5deb66d2b1d5bb35aee802348bf1b |
| ENCFF748IDH.tabix.bed.gz | 109.07 KB | e22e7cb5cf336730dfe50ed992854d25 |
| ENCFF748IDH.tabix.bed.gz.dvc | 106.0 B | 5dc844cf9fd0c3957c097e7fcfffbc37 |
| ENCFF748IDH.tabix.bed.gz.tbi | 52.45 KB | 3be193cfb0bc8a5030603285d3c756a8 |
| ENCFF748IDH.tabix.bed.gz.tbi.dvc | 109.0 B | c1405f5de938c38337564dbb41064275 |
| genomic_resource.yaml | 4.74 KB | cd4da57bc5971e9fa4b064674ee9d2b9 |
| genomic_resource_original.yaml | 4.58 KB | 7f13bf015dbb14535e781676bce73bb0 |
| statistics/ |