TF_ChIP-seq_ENCSR102CSD
TF_ChIP-seq ENCSR102CSD [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR102CSD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR102CSD [biosamplesummary="Homo sapiens transverse colon tissue male adult (37 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN342IVM|/analyses/ENCAN342IVM/} has in progress subobject document {31aac88c-1bca-4d75-b881-014c79619a43|/documents/31aac88c-1bca-4d75-b881-014c79619a43/} audit_internal_action: Released analysis {ENCAN342IVM|/analyses/ENCAN342IVM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF321WMV|/files/ENCFF321WMV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF321WMV|/files/ENCFF321WMV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR102CSD | float |
TF_ChIP-seq_ENCSR102CSD |
TF_ChIP-seq ENCSR102CSD [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="CTCF"]
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[9.29, 2.83e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292GYB.bed.gz | 751.57 KB | 5e1515af269ef45a5e76343aa1b6404e |
| ENCFF292GYB.bed.gz.dvc | 100.0 B | 71d64065d2febe09f6aeecd863fe7769 |
| ENCFF292GYB.tabix.bed.gz | 491.1 KB | 060f20d19e1762efa6555e3c15ce1600 |
| ENCFF292GYB.tabix.bed.gz.dvc | 106.0 B | 252c5107e55d5dbd43edcab0d30e5acb |
| ENCFF292GYB.tabix.bed.gz.tbi | 236.75 KB | 4ff14f7d7b933f16dd498623931a3705 |
| ENCFF292GYB.tabix.bed.gz.tbi.dvc | 110.0 B | d303125372339486b13615672720f8c1 |
| genomic_resource.yaml | 2.96 KB | f70647a399dcc6c9841786993a5e6b02 |
| genomic_resource_original.yaml | 2.83 KB | db846d2ef9cf6e80febeb436e6eef825 |
| statistics/ |